BLACK-FOOTED FERRET PROJECT

Twice feared extinct, the Black Footed Ferret has been the focus of a coordinated recovery effort for over thirty years. Modern genetic technologies may help complete the restoration of this cunning predator of the prairies’ keystone species: the prairie dog.

About This Project

As one of America’s most endangered animals, the Black-footed Ferret can become a model for developing genetic rescue techniques that could also help many endangered species similarly threatened by what is called the “extinction vortex” of progressive inbreeding and genetic drift.

Saving a Species

In 2013, Revive & Restore was invited by the United States Fish & Wildlife Service’s National Black-footed Ferret Conservation Center to explore the potential use of genomic technologies to increase the genetic diversity of the endangered Black-footed Ferret. Our evaluation began in 2014 with a study of Black-footed Ferret genomics and culminated with a 2016 proposal to apply new techniques of genetic rescue to the problems preventing the long-term sustainability of the species: ongoing genetic diversity loss and susceptibility to disease.

The Black-footed Ferret has been listed as an endangered species since 1967; more than a half century of misguided predator control campaigns and efforts to eradicate prairie dogs from farm and ranch land decimated the population. By 1985, the Black-footed Ferret was on the verge of extinction, and a bold conservation program, initiated by USFWS, intervened and saved the species. Biologists rescued the last surviving ferrets from the wild, began to breed them in captivity, build up their numbers, and repopulate the species throughout its historic habitats.  

Despite significant progress in reestablishing populations of ferrets in the wild, recovery assessments continue to show that the end goal of establishing self-sustaining wild populations, and removing the ferret from the endangered species list, remains a moving target. A five-year review of recovery efforts conducted by USFWS (the agency responsible for overseeing the conservation of all endangered species) found in November 2008 that the species remained one of the most endangered mammals in the U.S. because of two major obstacles: Sylvatic plague and the ongoing loss of genetic diversity.

Black-footed Ferret recovery has grown into a multi-agency conservation effort. Today, USFWS leads a consortium of partners known as the Black-footed Ferret Recovery Implementation Team. The Recovery Team includes several state agencies, First Nations’ governments, zoos, private landowners, and nonprofit organizations.  

February 2014: Participants of the first meeting between the Black-footed Ferret Recovery Implementation Team and Revive & Restore, who together formed the Genomic Working Group, setting annual meetings for the genomic management of the Black-footed Ferret.
From left to Right: Ryan Phelan (Revive & Restore), Seth Willey (USFWS), Oliver Ryder (SDZG), Colleen Lynch (Riverbanks Zoo and Garden), Pete Gober (USFWS, NBFFCC), Bob Weisse (SDZG), Dean Biggins (U.S. Geological Survey), Stewart Brand (Revive & Restore), Ben Novak (Revive & Restore), Robyn Bortner (USFWS, NBFFCC), and Sarah Oyler-McCance (U.S. Geological Survey). 

Revive & Restore partnered with San Diego Zoo Global to study the genomes of four unique Black-footed Ferret specimens with the goal of understanding the extent of the genetic diversity problem and whether existing genetic resources could inject new diversity into the ferret population.

During this process, USFWS also asked Revive & Restore to develop a long-term solution to Sylvatic Plague. While vaccines for the disease have been developed, a permanent solution is needed for ferrets to survive in the wild without human assistance.

Revive & Restore worked for the next two years with a diverse team of scientists to construct plausible solutions to Sylvatic Plague. In November 2016, Revive & Restore submitted a proposal to the National Black-footed Ferret Conservation Center outlining the initial laboratory steps needed to address the genetic rescue of the Black-footed Ferret on two fronts: developing genetic resistance to Sylvatic Plague and optimizing the reproductive technologies necessary to increase genetic diversity. With increased genetic variability and a decreased susceptibility to Sylvatic Plague, the recovery effort may one day achieve the goal of sustainable wild populations of Black-footed Ferrets across their historic range.

The problems preventing a full recovery of the Black-footed Ferret:

The Genetic Diversity Problem

Of the handful of wild ferrets brought into captivity between 1985 and 1987, some were members of the same family and others died before successfully breeding. It is estimated that all living Black-footed Ferrets today trace their ancestry to just seven founders. Not all of these founders contributed equally to the genetic makeup of living ferrets, despite careful efforts to retain founding diversity. Models predict that today’s ferrets possess about 85% of their original genetic diversity, and that this number will continue to fall, due to genetic drift. Loss of genetic diversity can have significant long-term consequences; it can limit adaptability to wild conditions, increase susceptibility to disease, decrease fertility, and increase the frequency of genetic abnormalities.

The Threat of Disease

Even if genetic diversity is improved, the ultimate survival of wild Black-footed Ferret populations may still be jeopardized by disease. Sylvatic Plague is the single largest challenge to the species. The plague bacteria, Yersinia pestis, was brought to North America in the late 1800s, and it is the same pestilence that devastated Europe in the 14th century. Today the disease is widespread over the western United States and Great Plains.

Plague can be spread a number of ways, but ferrets contract the disease primarily from their prey, the Prairie Dog. Prairie Dog populations are large enough and diverse enough to adapt to plague, and there is evidence that some populations already exhibit resistance. This is not possible for the Black-footed Ferret. It is thought that, although the domestic ferret appears to be immune to plague, Black-footed Ferrets have always been highly susceptible. That fact, coupled with the lack of genetic diversity indicate that intervention is needed to achieve full recovery.

Plague’s complex epidemiology and widespread abundance on the landscape make it impossible to eradicate. This reality coupled with the ferret’s extreme susceptibility to the disease means successful recovery of the Black-footed Ferret is dependent upon finding a solution to that susceptibility. The consensus of dozens of scientists and conservationists is that we cannot treat any link in the chain of disease transmission, we need to treat the ferrets directly.

The good news is that a vaccine has been developed that provides lifelong immunity. That a workable vaccine has been developed means that the Black-footed Ferret’s immune system can be trained to recognize and fight plague. The vaccine can save individual ferrets, but, since vaccinated immunity cannot be inherited by wild born ferrets, it keeps the species conservation reliant. Wild-born ferrets must be captured and vaccinated, and then recaptured for a booster shot. For the species to fully recover, a genetic solution that conveys inheritable resistance is necessary.

How Genetic Rescue Can Help

While the Black-footed Ferret is susceptible to Sylvatic Plague, the domestic ferret (a close cousin) is completely resistant to the disease. We have proposed conducting a series of comparative analyses to discover which genetic traits endow domestic ferrets with immunity. Then precise genome editing would be used to write the genetic codes of those traits into the Black-footed Ferret genome. All of the laboratory research can be completed in vitro without working with living Black-footed Ferrest. We intend to perform disease screening in cell cultures contained in the lab. By using cell lines, animal testing will be avoided and multiple genetic solution tests can be run simultaneously at low cost.

The first step in assessing our hypotheses will be to compare the Black-footed Ferret’s genome with that of the domestic ferret in order to identify which genes in the immune system are different. Those genes will be likely candidates for a genomic solution. The next step will be to analyze how cellular mechanisms work when plague bacteria fail to infect domestic ferret cells and how those mechanisms change when Black-footed Ferret cells are infected. From these comparisons we should be able to identify a narrow set of genes involved in the immune system to fight plague. Those genes will then be edited into Black-footed Ferret cell lines, and disease screening assays will follow.

Once a Black-footed Ferret cell line exhibiting resistance to Sylvatic Plague has been produced, living ferrets will be generated by cloning for the next research step. We have proposed simultaneous experiments to optimize the process of cloning Black-footed Ferrets using domestic ferrets as surrogate egg cell donors and mothers, thus avoiding using endangered Black-footed Ferrets for experimental procedures. This application of interspecies cloning will also effectively enable the Recovery Team to increase the wild population of ferrets and conserve genetic diversity in an additive, rather than detracting, manner. It will even allow the recovery of historic genetic diversity and add new founders for the population.

Our Hypotheses

A. Antibodies Hypothesis

Our leading hypothesis is that domestic ferrets produce Sylvatic Plague antibodies that enable an innate immune response instead of a slower adaptive immune response like the Black-footed Ferret. Introducing new antibody chains is becoming practically routine in the field of genome editing; genetic engineering of antibodies for human health purposes has steadily advanced over the past few decades using many model organisms including rodents, cattle, and even chickens. Through a similar process, we can efficiently introduce in vitro antibody elements from the domestic ferret into the immunity genes of Black-footed Ferret cells.

B. Membrane Receptor Hypothesis

A second hypothesis is that cell membrane receptors are the key to the domestic ferret’s resistance to plague. Rather than fight the infection after it invades, particular changes to cell membrane receptors can completely prevent plague bacteria from infecting cells.

C. Intracellular Mechanisms Hypothesis

A third route is also possible. Plague bacteria invade immune system cells and use the host’s own cell proteins to protect themselves from being digested inside the host’s cells, a process called phagocytosis. This protection allows plague bacteria to multiply unnoticed inside the very immune system cells that are supposed to kill the bacteria. The domestic ferret’s immune cell proteins may have mutations that make them incompatible with plague’s commandeering abilities.